Research - Francisco Fernando Cavazos

RESEARCH

Computational approaches to understanding biological sequences and structures.

RESEARCH AREAS

K-mer Analysis

Building efficient tools for k-mer counting, indexing, and statistical analysis of genomic sequences.

Bioinformatics Tooling

Designing open-source software that makes complex genomic analyses accessible and reproducible.

PUBLICATIONS

Journal Articles

PUBLISHED

Dissecting RNA selectivity mediated by tandem RNA-binding domains

Sarah E. Harris, Yue Hu, Kaitlin Bridges, Francisco F Cavazos Jr, Justin G. Martyr, Bryan B. Guzmán, Jernej Murn, Mariam Aleman, Daniel Dominguez

Journal of Biological Chemistry, 2025

PUBLISHED

Integrated multi-omics analysis of zinc-finger proteins uncovers roles in RNA regulation

Maya L. Gosztyla, Lijun Zhan, Sara Olson, Xintao Wei, Jack Naritomi, Grady Nguyen, Lena Street, Grant A. Goda, Francisco F. Cavazos, Jonathan C. Schmok, Manya Jain, Easin Uddin Syed, Eunjeong Kwon, Wenhao Jin, Eric Kofman, Alexandra T. Tankka, Allison Li, Valerie Gonzalez, Eric Lécuyer, Daniel Dominguez, Marko Jovanovic, Brenton R. Graveley, Gene W. Yeo

Molecular Cell, 2024

PUBLISHED

Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro

Sarah E Harris, Maria S Alexis, Gilbert Giri, Francisco F Cavazos Jr, Yue Hu, Jernej Murn, Maria M Aleman, Christopher B Burge, Daniel Dominguez

Nature Communications, 2024

Preprints

PREPRINT

Contributions of Folded and Disordered Domains to RNA Binding by HNRNPR

Bryan B Guzmán, Grant A Goda, Alli Jimenez, Justin G Martyr, Yue Hu, Francisco F Cavazos Jr, Maria M Aleman, Daniel Dominguez

bioRxiv, 2025

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